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Templates

StudyΒΆ

Minimal structure
aliasvery_unique_study
titleTest Study

Download the example file πŸ“₯ here.

Extended structure
aliasvery_unique_study
titleTest Study
project_attribute_1someAttribute|attributeValue

Download the example file πŸ“₯ here.

SampleΒΆ

Minimal structure
aliasgeographic location (country and/or sea)collection datetaxon_id
sample_name1Switzerland2024-10-1112
sample_name2Switzerland2024-10-1112
sample_name3Switzerland2024-10-1112
sample_name4Switzerland2024-10-1112

Download the example file πŸ“₯ here.

Extended structure
aliasgeographic location (country and/or sea)collection datetaxon_idsexsubject
sample_name1Switzerland2024-10-1112malesubject-1
sample_name2Switzerland2024-10-1112femalesubject-1
sample_name3Switzerland2024-10-1112malesubject-1
sample_name4Switzerland2024-10-1112femalesubject-1

Download the example file πŸ“₯ here.

ExperimentΒΆ

Minimal structure

The minimal number of mandatory columns for an experiment is 11. The columns study_ref and sample_description (sample ID) link each experiment to its corresponding study and sample.

Download the example file πŸ“₯ here.

Extended structure

Download the example files:

  1. Single reads πŸ“₯ here,

  2. Paired reads πŸ“₯ here.